微生物功能基因組學(xué)研究
Microbial Functional Genomics
黃留玉 王恒?擰? 史兆興 朱厚礎(chǔ) 蘇國富
關(guān)鍵詞:微生物功能基因組學(xué), 藥物靶位, 疫苗, 生物功能圖譜
分類號(hào):Q933 文獻(xiàn)標(biāo)識(shí)碼:A
文章編號(hào):0001-6209(2003)03-0432-07
自從1995年流感嗜血桿菌的基因組序列測(cè)定完成之后[1],目前已有75種(株)微生物的基因組完成測(cè)序,160多種(株)微生物的基因組測(cè)序正在進(jìn)行中[2].隨著各種微生物基因組測(cè)序工作的不斷完成和序列信息的積累,微生物基因組學(xué)研究的重點(diǎn)已由結(jié)構(gòu)基因組學(xué)向功能基因組學(xué)轉(zhuǎn)移.微生物功能基因組學(xué)研究不僅要闡明微生物基因組內(nèi)每個(gè)基因的作用或功能,還要研究基因的調(diào)節(jié)及表達(dá)譜,進(jìn)而從整個(gè)基因組及其全套蛋白質(zhì)產(chǎn)物的結(jié)構(gòu)、功能、機(jī)理的高度去了解微生物生命活動(dòng)的全貌,揭示微生物世界的各種前所未知的規(guī)律,并使之為人類和社會(huì)服務(wù).……
基金項(xiàng)目:國家重大基礎(chǔ)研究發(fā)展規(guī)劃(973)項(xiàng)目(G1999054103)和首都二四八重大創(chuàng)新工程項(xiàng)目(H010210360119)
作者簡介:黃留玉(1962-),男,河南省平輿縣人,研究員,碩士,主要從事基因工程及微生物學(xué)研究.Tel/Fax:86-10-83821044;E-mail:huangly@nic.bmi.ac.cn
作者單位:黃留玉(軍事醫(yī)學(xué)科學(xué)院生物工程研究所,北京,100071)
王恒?牛?軍事醫(yī)學(xué)科學(xué)院生物工程研究所,北京,100071)
史兆興(軍事醫(yī)學(xué)科學(xué)院生物工程研究所,北京,100071)
朱厚礎(chǔ)(軍事醫(yī)學(xué)科學(xué)院生物工程研究所,北京,100071)
蘇國富(軍事醫(yī)學(xué)科學(xué)院生物工程研究所,北京,100071)
參考文獻(xiàn):
[1]Fleischmann R D, Adams M D, White O, et al. Whole-genome random sequencing and assembly of Haemophilus influenzae RD. Science,1995,269(5223):496~512.
[2]http://www. Tigr.org/tdb/mdb/mdbcomplete.html
[3]Mori H, Isono K, Horiuchi T, et al. Functional genomics of Escherichia coli in Japan. Res Microbial, 2000,151:121~128.
[4]Ogasawara N. Systematic function analysis of Bacillus subtilis genes. Res Microbial, 2000,151:129~134.
[5]Chalker A F, Lunsford R D, Rational identification of new antibacterial drug targets that are essential for viability using a genomics-based approach. Pharmacology & therapeutics, 2002,95:1~20.
[6]Richmond C S, Glasner J D, Mau R, et al. Genome-wide expression profiling in Eschericha coli K-12. Nucleic Acids Res, 1999,27:3821~3835.
[7]Ye R W, Tao W, Bedzyk L, et al. Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J Bacterial, 2000,182:4458~4465.
[8]Perrot F, Hebraud M, Junt G A, et al. Protein synthesis in Escherichia coli at 4℃. Electrophoresis, 2000, 21:1625~1629.
[9]Bianchi M M, Ngo S, Vandenbol M, et al. Large-scale phenotypic analysis reveals identical contributions to cell functions of known and unknown yeast genes. Yeast, 2001,18(15):1397~1412.
[10]Ross M P, Coelho P S, Roemer T, et al. Large-scale analysis of yeast genome by transposon tagging and gene disruption. Nature, 1999,402:413~418.
[11]Reinscheid D J, Gottschalk B, Schubert A, et al. Identification and molecular analysis of pcsB, a protein required for cell wall separation of Group B streptococcus. J Bacteriol, 2001,183:1175~1183.
[12]Read T D, Gill S R, Tettelin H, et al. Finding drug targets in microbial. DDT, 2001, 6(17):887~892.
[13]Loferer H. Mining bacterial genomes for antimicrobial targets. Molecular Medicine Today, 2000,6:470~474.
[14]Forsyth R A, Haselbeck R J, Ohlsen K L, et al. A genome-wide strategy for the identification of essential genes in Staphylococcus aureus. Mol Microbiol, 2002,43(6):1387~1400.
[15]Foulkes J G. Elitra pharmaceuticals: new paradigms for antimicrobial drug discovery. Drug Discovery Today, 2002,7(5):s12~s15.
[16]Grandi G. Antibacterial vaccine design using genomics and proteomics. TRENDS in Biotechnology, 2001,19(5):181~188.
[17]Tettelin H, Saunders N J, Heldelberg J, et al. Complete genome sequencing of Neisseria Meningitidis serogrous B strain MC58. Science, 2000,287:1809~1581.
[18]Rappppuoli R. Reverse vaccinology. Curr Opin Microbiol,2000,3:445~450.
[19]Chakabari D N, Fiske M J, Fletcher L D, et al. Application of genomics and proteomics for identification of bac-terial gene products as potential vaccine candidates. Vaccine, 2001,19:601~612.
[20]Wassenaar T M, Gaastrs W. Bacterial virulence: can we draw the line? FEMS Microbiology Letters, 2001,201:1~7.
[21]Hayash T, Makino K, Ohnishi M, et al. Complete genome sequence of enterohemorrhagic Eschelichia coli O157:H7 and genomic comparison with laboratory strain K-12. DNA Research, 2001,8:11~22.
[22]Cornelis G R, Rappuoli R. Host-microbe interactions: bacteria microbiology will never be the same again... Current Opinion in Microbiology, 2001,4:13~15.
[23]Francis M S, Wolf W H, forsberg A. Regulation of type Ⅲ secretion systems.Current Opinion in Microbiology, 2002,5:166~172.
[24]Orth K. Function of the yersinia effector YopJ. Current Opinion in Microbiology, 2002,5:38~43.
[25]Cohen P, Bouaboula M, Bellis M, et al. Monitoring cellular responses to Listeria monocytogenes with oligonucleotide arrays.J Biol Chem, 2000, 275:11181~11190.
[26]Ideker T, Thorsson V, Ranish J A, et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science, 2001,292(5):929~934.
[27]Bono H, Ogata H, Goto S, et al. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res,1998,277:1453~1474.
[28]Overt M W, Schilling C H, Famili I, et al. Metabolic modeling of microbial. Trend in Biochemical Sciences, 2001,26(3):179~186.
[29]VanBogelen R A, Greis K D, Blumenthal R M, et al. Mapping regulatory networks in microbial cells. Trends in Microbio-logy, 1999,7(8):320~328.
[30]Rain J C, Selig L, Reuse H D, et al. The protein-protein interaction map of Helicobacter pylori. Nature, 2001,409:211~215.??
微生物學(xué)報(bào)
ACTA MICROBIOLOGICA SINICA
2003 Vol.43 No.3 P.432-438